treeomics | Decrypting somatic mutation patterns to reveal

by reiterlab Python Version: v1.9.2 License: GPL-3.0

X-Ray Key Features Code Snippets Community Discussions Vulnerabilities Install Support

kandi X-RAY | treeomics Summary

treeomics is a Python library typically used in Healthcare, Pharma, Life Sciences applications. treeomics has no bugs, it has no vulnerabilities, it has build file available, it has a Strong Copyleft License and it has low support. You can download it from GitHub.

Developed by: JG Reiter, AP Makohon-Moore, JM Gerold, I Bozic, K Chatterjee, C Iacobuzio-Donahue, B Vogelstein, MA Nowak.

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Support

treeomics has a low active ecosystem.

It has 39 star(s) with 18 fork(s). There are 7 watchers for this library.

It had no major release in the last 12 months.

There are 5 open issues and 16 have been closed. On average issues are closed in 111 days. There are 1 open pull requests and 0 closed requests.

It has a neutral sentiment in the developer community.

The latest version of treeomics is v1.9.2

Quality

treeomics has no bugs reported.

Security

treeomics has no vulnerabilities reported, and its dependent libraries have no vulnerabilities reported.

License

treeomics is licensed under the GPL-3.0 License. This license is Strong Copyleft.

Strong Copyleft licenses enforce sharing, and you can use them when creating open source projects.

Reuse

treeomics releases are available to install and integrate.

Build file is available. You can build the component from source.

Installation instructions are not available. Examples and code snippets are available.

Top functions reviewed by kandi - BETA

kandi has reviewed treeomics and discovered the below as its top functions. This is intended to give you an instant insight into treeomics implemented functionality, and help decide if they suit your requirements.

This method extracts the coverage data from the input file
Reads a TSV file
Check if variant is incomplet
Read a table from a TSV file
Parse a VCF file
Generate a variant from a variant
Add a variant to the variant
Create a table showing the incompatibility table
Format a gene name
Add a conflict graph
Analyze patient data
Infer the max compatible tree for a given patient
Add information about the sequencing information
Generate Bayesian Hinton diagram
Add artifact information to the plot
Create conflict graph files
Generate a table of clustered clusters
Compute hinton diagram
Summarize driver drivers
Solve conflicting mutation patterns
Add information about the genetic distance matrix
Write a report to the report
Add the Jaccard similarity information
Create a maximum likelihood tree for a patient
Create a latex figure file
Read a data table from a TSV file

Get all kandi verified functions for this library.

treeomics Key Features

No Key Features are available at this moment for treeomics.

treeomics Examples and Code Snippets

No Code Snippets are available at this moment for treeomics.

Community Discussions

No Community Discussions are available at this moment for treeomics.Refer to stack overflow page for discussions.

Community Discussions, Code Snippets contain sources that include Stack Exchange Network

Vulnerabilities

No vulnerabilities reported

Install treeomics

You can download it from GitHub.
You can use treeomics like any standard Python library. You will need to make sure that you have a development environment consisting of a Python distribution including header files, a compiler, pip, and git installed. Make sure that your pip, setuptools, and wheel are up to date. When using pip it is generally recommended to install packages in a virtual environment to avoid changes to the system.

Support

For any new features, suggestions and bugs create an issue on GitHub. If you have any questions check and ask questions on community page Stack Overflow .

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